Full Link:
STRINGSTRING
PGSC0003DMT400012089 PGSC0003DMT400012089 PGSC0003DMT400001701 PGSC0003DMT400001701 PGSC0003DMT400079675 PGSC0003DMT400079675 PGSC0003DMT400002240 PGSC0003DMT400002240 PGSC0003DMT400050536 PGSC0003DMT400050536 PGSC0003DMT400061155 PGSC0003DMT400061155 PGSC0003DMT400061156 PGSC0003DMT400061156
"PGSC0003DMT400002240" - Hydroxyproline-rich glycoprotein family protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400002240Hydroxyproline-rich glycoprotein family protein (314 aa)    
Predicted Functional Partners:
PGSC0003DMT400001701
CAPIP2 (195 aa)
       
 
  0.595
PGSC0003DMT400012089
Oxysterol-binding family protein (727 aa)
           
  0.501
PGSC0003DMT400061156
Embryo-specific 3 (155 aa)
       
 
  0.482
PGSC0003DMT400061155
Embryo-specific 3 (166 aa)
       
 
  0.482
PGSC0003DMT400079675
Alpha-l-fucosidase (482 aa)
     
   
  0.409
PGSC0003DMT400050536
Alpha-l-fucosidase (468 aa)
     
   
  0.409
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (2%)