Full Link:
close STRING Website Improvement Campaign
deny allow Over the next 24 hours, we are collecting usage information on the web-interface (learn more).   Do you allow anonymous tracking of your activity ?
STRINGSTRING
PGSC0003DMT400015585 PGSC0003DMT400015585 PGSC0003DMT400069485 PGSC0003DMT400069485 PGSC0003DMT400063056 PGSC0003DMT400063056 PGSC0003DMT400002284 PGSC0003DMT400002284 PGSC0003DMT400022131 PGSC0003DMT400022131 PGSC0003DMT400027151 PGSC0003DMT400027151 psaD psaD PGSC0003DMT400054480 PGSC0003DMT400054480 PSBO PSBO MSP MSP PGSC0003DMT400050859 PGSC0003DMT400050859
"PGSC0003DMT400002284" - Conserved gene of unknown function in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400002284Conserved gene of unknown function (195 aa)    
Predicted Functional Partners:
PGSC0003DMT400022131
Photosystem II reaction center psb28 protein (180 aa)
   
        0.598
PGSC0003DMT400069485
Tetrapyrrole-binding protein, chloroplast (264 aa)
   
        0.568
PGSC0003DMT400063056
Thylakoid lumenal 25.6 kDa protein, chloroplast (246 aa)
   
        0.564
MSP
Oxygen-evolving enhancer protein 1, chloroplastic (329 aa)
   
        0.552
PSBO
Oxygen-evolving enhancer protein 1, chloroplastic; Stabilizes the manganese cluster which is the primary site of water splitting (333 aa)
   
        0.549
PGSC0003DMT400054480
Photosystem I subunit III (228 aa)
   
        0.536
psaD
Photosystem I reaction centre PSI-D subunit (207 aa)
   
        0.510
PGSC0003DMT400015585
Conserved gene of unknown function (260 aa)
   
        0.504
PGSC0003DMT400050859
Conserved gene of unknown function (255 aa)
   
        0.497
PGSC0003DMT400027151
Thylakoid lumen 15.0 kDa protein (222 aa)
   
        0.496
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (5%)