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PGSC0003DMT400054762 PGSC0003DMT400054762 PGSC0003DMT400073070 PGSC0003DMT400073070 PGSC0003DMT400070672 PGSC0003DMT400070672 PGSC0003DMT400017488 PGSC0003DMT400017488 PGSC0003DMT400002390 PGSC0003DMT400002390 PGSC0003DMT400009647 PGSC0003DMT400009647 PGSC0003DMT400065655 PGSC0003DMT400065655 PGSC0003DMT400009339 PGSC0003DMT400009339 PGSC0003DMT400073491 PGSC0003DMT400073491 PGSC0003DMT400019560 PGSC0003DMT400019560 PGSC0003DMT400011294 PGSC0003DMT400011294
"PGSC0003DMT400002390" - Cytochrome oxidase biogenesis protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400002390Cytochrome oxidase biogenesis protein (184 aa)    
Predicted Functional Partners:
PGSC0003DMT400073491
Vacuolar membrane ATPase subunit c’’ (177 aa)
   
 
  0.826
PGSC0003DMT400065655
Vacuolar membrane ATPase subunit c’’ (179 aa)
   
 
  0.826
PGSC0003DMT400019560
Vacuolar membrane ATPase subunit c’’ (177 aa)
   
 
  0.826
PGSC0003DMT400011294
V-type proton ATPase 16 kDa proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (164 aa)
   
 
  0.826
PGSC0003DMT400009647
V-type proton ATPase 16 kDa proteolipid subunit c2; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells (165 aa)
   
 
  0.826
PGSC0003DMT400009339
V-type proton ATPase 16 kDa proteolipid subunit c2 (165 aa)
   
 
  0.826
PGSC0003DMT400017488
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1487 aa)
   
   
  0.813
PGSC0003DMT400073070
Sec61 transport protein (475 aa)
     
 
  0.805
PGSC0003DMT400070672
Protein translocase secy subunit (538 aa)
     
 
  0.805
PGSC0003DMT400054762
Sec61 transport protein (475 aa)
     
 
  0.805
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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