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PGSC0003DMT400047011 PGSC0003DMT400047011 PGSC0003DMT400039211 PGSC0003DMT400039211 PGSC0003DMT400078207 PGSC0003DMT400078207 PGSC0003DMT400073255 PGSC0003DMT400073255 PGSC0003DMT400002470 PGSC0003DMT400002470 PGSC0003DMT400048813 PGSC0003DMT400048813 PGSC0003DMT400003681 PGSC0003DMT400003681 PGSC0003DMT400042226 PGSC0003DMT400042226 PGSC0003DMT400001044 PGSC0003DMT400001044 PGSC0003DMT400004146 PGSC0003DMT400004146 PGSC0003DMT400079491 PGSC0003DMT400079491
"PGSC0003DMT400002470" - Exonuclease in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400002470Exonuclease (203 aa)    
Predicted Functional Partners:
PGSC0003DMT400078207
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (264 aa)
     
  0.959
PGSC0003DMT400042226
U3 small nucleolar ribonucleoprotein protein imp4 (324 aa)
     
        0.829
PGSC0003DMT400001044
U3 small nucleolar ribonucleoprotein protein imp4 (167 aa)
     
        0.829
PGSC0003DMT400073255
Replication factor C / DNA polymerase III gamma-tau subunit (1213 aa)
     
  0.788
PGSC0003DMT400039211
Replication factor C / DNA polymerase III gamma-tau subunit (1020 aa)
     
  0.788
PGSC0003DMT400047011
Replication factor C / DNA polymerase III gamma-tau subunit (1271 aa)
       
  0.787
PGSC0003DMT400079491
RNA-binding protein (197 aa)
     
      0.767
PGSC0003DMT400004146
Transducin family protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (437 aa)
     
        0.767
PGSC0003DMT400003681
Transducin family protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (440 aa)
     
        0.767
PGSC0003DMT400048813
Ribosome biogenesis regulatory protein (329 aa)
     
      0.744
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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