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PGSC0003DMT400005838 PGSC0003DMT400005838 PGSC0003DMT400069671 PGSC0003DMT400069671 PGSC0003DMT400054361 PGSC0003DMT400054361 PGSC0003DMT400065620 PGSC0003DMT400065620 PGSC0003DMT400000776 PGSC0003DMT400000776 PGSC0003DMT400006164 PGSC0003DMT400006164 PGSC0003DMT400061704 PGSC0003DMT400061704 PGSC0003DMT400055470 PGSC0003DMT400055470 PGSC0003DMT400002498 PGSC0003DMT400002498 PGSC0003DMT400022579 PGSC0003DMT400022579 PGSC0003DMT400035383 PGSC0003DMT400035383
"PGSC0003DMT400002498" - Phenazine biosynthesis protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400002498Phenazine biosynthesis protein (89 aa)    
Predicted Functional Partners:
PGSC0003DMT400054361
Ly200 (76 aa)
       
      0.711
PGSC0003DMT400035383
Ly200 (378 aa)
       
      0.711
PGSC0003DMT400022579
Ly200 protein (133 aa)
       
      0.711
PGSC0003DMT400005838
Ly200 (133 aa)
       
      0.711
PGSC0003DMT400006164
40S ribosomal protein S30 (62 aa)
       
      0.645
PGSC0003DMT400000776
40S ribosomal protein S30 (62 aa)
       
      0.645
PGSC0003DMT400069671
Ribosomal protein L41 (105 aa)
       
      0.620
PGSC0003DMT400065620
RNA binding protein (237 aa)
       
      0.620
PGSC0003DMT400061704
RNA binding protein (737 aa)
       
      0.620
PGSC0003DMT400055470
RNA binding protein (545 aa)
       
      0.620
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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