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PGSC0003DMT400020675 PGSC0003DMT400020675 PGSC0003DMT400000473 PGSC0003DMT400000473 PGSC0003DMT400000574 PGSC0003DMT400000574 PGSC0003DMT400002796 PGSC0003DMT400002796 PGSC0003DMT400040652 PGSC0003DMT400040652 PGSC0003DMT400000575 PGSC0003DMT400000575 PGSC0003DMT400029795 PGSC0003DMT400029795 PGSC0003DMT400000163 PGSC0003DMT400000163 PGSC0003DMT400040127 PGSC0003DMT400040127 PGSC0003DMT400077919 PGSC0003DMT400077919 PGSC0003DMT400000158 PGSC0003DMT400000158
"PGSC0003DMT400002796" - Cell differentiation protein rcd1 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400002796Cell differentiation protein rcd1 (400 aa)    
Predicted Functional Partners:
PGSC0003DMT400000575
Ccr4-not transcription complex (407 aa)
     
  0.975
PGSC0003DMT400000574
Ccr4-not transcription complex (464 aa)
     
  0.975
PGSC0003DMT400000473
Ccr4-not transcription complex (391 aa)
     
  0.975
PGSC0003DMT400000163
Ccr4-not transcription complex (231 aa)
     
  0.975
PGSC0003DMT400000158
Ccr4-not transcription complex (385 aa)
     
  0.975
PGSC0003DMT400040652
RNA exonuclease NGL1 (364 aa)
       
  0.966
PGSC0003DMT400029795
Carbon catabolite repressor protein (605 aa)
       
  0.966
PGSC0003DMT400077919
CCR4-NOT transcription complex subunit (670 aa)
     
  0.920
PGSC0003DMT400040127
VIP2 (661 aa)
     
  0.920
PGSC0003DMT400020675
Thioredoxin (215 aa)
     
  0.920
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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