Full Link:
STRINGSTRING
PGSC0003DMT400078293 PGSC0003DMT400078293 PGSC0003DMT400045570 PGSC0003DMT400045570 PGSC0003DMT400033081 PGSC0003DMT400033081 PGSC0003DMT400003105 PGSC0003DMT400003105 PGSC0003DMT400003104 PGSC0003DMT400003104 PGSC0003DMT400063252 PGSC0003DMT400063252 PGSC0003DMT400062355 PGSC0003DMT400062355 PGSC0003DMT400032834 PGSC0003DMT400032834 PGSC0003DMT400000611 PGSC0003DMT400000611 PGSC0003DMT400018869 PGSC0003DMT400018869 PGSC0003DMT400010896 PGSC0003DMT400010896
"PGSC0003DMT400003104" - EMB1441 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400003104EMB1441 (582 aa)    
Predicted Functional Partners:
PGSC0003DMT400045570
Binding protein (1093 aa)
     
 
  0.759
PGSC0003DMT400033081
U4/U6 small nuclear ribonucleoprotein Prp4 (583 aa)
       
      0.660
PGSC0003DMT400078293
Eukaryotic translation initiation factor 2 beta subunit (265 aa)
       
 
  0.640
PGSC0003DMT400032834
TRNA-pseudouridine synthase (542 aa)
     
      0.594
PGSC0003DMT400018869
H/ACA ribonucleoprotein complex subunit 4 (573 aa)
     
      0.594
PGSC0003DMT400003105
BRI1-KD interacting protein 117 (535 aa)
 
            0.563
PGSC0003DMT400063252
Dead box ATP-dependent RNA helicase (566 aa)
       
 
  0.543
PGSC0003DMT400062355
Plastid RNA-binding protein 1 (291 aa)
       
 
  0.543
PGSC0003DMT400010896
DEAD-box ATP-dependent RNA helicase 48 (806 aa)
       
 
  0.543
PGSC0003DMT400000611
Dead box ATP-dependent RNA helicase (871 aa)
       
 
  0.543
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (2%)