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PGSC0003DMT400040806 PGSC0003DMT400040806 PGSC0003DMT400018673 PGSC0003DMT400018673 PGSC0003DMT400003157 PGSC0003DMT400003157 NR3 NR3 PGSC0003DMT400032029 PGSC0003DMT400032029 PGSC0003DMT400032855 PGSC0003DMT400032855
"PGSC0003DMT400003157" - 2-oxoglutarate-dependent dioxygenase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT4000031572-oxoglutarate-dependent dioxygenase (314 aa)    
Predicted Functional Partners:
NR3
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (911 aa)
     
   
  0.524
PGSC0003DMT400018673
Flavonol synthase/flavanone 3-hydroxylase (280 aa)
   
          0.518
PGSC0003DMT400032029
Conserved gene of unknown function (395 aa)
           
  0.515
PGSC0003DMT400040806
Conserved gene of unknown function (568 aa)
           
  0.403
PGSC0003DMT400032855
Steroid nuclear receptor, ligand-binding (589 aa)
           
  0.403
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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