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PGSC0003DMT400009595 PGSC0003DMT400009595 PGSC0003DMT400071374 PGSC0003DMT400071374 PGSC0003DMT400071582 PGSC0003DMT400071582 PGSC0003DMT400023896 PGSC0003DMT400023896 PGSC0003DMT400012415 PGSC0003DMT400012415 PGSC0003DMT400069203 PGSC0003DMT400069203 PGSC0003DMT400077993 PGSC0003DMT400077993 PGSC0003DMT400003338 PGSC0003DMT400003338 PGSC0003DMT400066226 PGSC0003DMT400066226 PGSC0003DMT400000836 PGSC0003DMT400000836 PGSC0003DMT400053003 PGSC0003DMT400053003
"PGSC0003DMT400003338" - ATCUL3/ATCUL3A/CUL3/CUL3A in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400003338ATCUL3/ATCUL3A/CUL3/CUL3A (733 aa)    
Predicted Functional Partners:
PGSC0003DMT400012415
RBX1 (120 aa)
     
  0.975
PGSC0003DMT400009595
DNA damage-binding protein 1 (261 aa)
     
  0.958
PGSC0003DMT400069203
CSN5 protein (367 aa)
     
  0.957
PGSC0003DMT400023896
CSN5 protein (367 aa)
     
  0.957
PGSC0003DMT400077993
Transcription elongation factor B polypeptide (98 aa)
       
  0.957
PGSC0003DMT400000836
Protein cbxX, chromosomal (483 aa)
     
  0.953
PGSC0003DMT400066226
Tip120 (339 aa)
     
 
  0.947
PGSC0003DMT400071374
Cop11 protein (440 aa)
     
  0.936
PGSC0003DMT400071582
Ubiquitin carrier protein (222 aa)
       
  0.935
PGSC0003DMT400053003
Ubiquitin carrier protein (183 aa)
       
  0.935
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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