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PGSC0003DMT400039746 PGSC0003DMT400039746 PGSC0003DMT400047166 PGSC0003DMT400047166 PGSC0003DMT400023282 PGSC0003DMT400023282 PGSC0003DMT400076435 PGSC0003DMT400076435 PGSC0003DMT400025851 PGSC0003DMT400025851 PGSC0003DMT400073895 PGSC0003DMT400073895 PGSC0003DMT400064440 PGSC0003DMT400064440 PGSC0003DMT400003494 PGSC0003DMT400003494 PGSC0003DMT400029859 PGSC0003DMT400029859 PGSC0003DMT400029672 PGSC0003DMT400029672 PGSC0003DMT400032023 PGSC0003DMT400032023
"PGSC0003DMT400003494" - Ubiquitin-protein ligase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400003494Ubiquitin-protein ligase (275 aa)    
Predicted Functional Partners:
PGSC0003DMT400025851
BTB/POZ domain-containing protein (803 aa)
     
 
  0.716
PGSC0003DMT400073895
Conserved gene of unknown function (289 aa)
           
  0.404
PGSC0003DMT400032023
Conserved gene of unknown function (413 aa)
           
  0.404
PGSC0003DMT400029672
Conserved gene of unknown function (229 aa)
           
  0.404
PGSC0003DMT400076435
PHO2 (926 aa)
     
 
  0.403
PGSC0003DMT400064440
Ubiquitin conjugating enzyme (728 aa)
     
 
  0.403
PGSC0003DMT400047166
Ubiquitin conjugating enzyme (462 aa)
     
 
  0.403
PGSC0003DMT400039746
Ubiquitin conjugating enzyme (725 aa)
     
 
  0.403
PGSC0003DMT400029859
Thioredoxin 1 (552 aa)
     
 
  0.403
PGSC0003DMT400023282
Gene of unknown function (284 aa)
     
 
  0.403
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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