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PGSC0003DMT400032098 PGSC0003DMT400032098 LSD1 LSD1 PGSC0003DMT400004344 PGSC0003DMT400004344 PGSC0003DMT400078769 PGSC0003DMT400078769 PGSC0003DMT400049703 PGSC0003DMT400049703 PGSC0003DMT400078771 PGSC0003DMT400078771 PGSC0003DMT400051889 PGSC0003DMT400051889 PGSC0003DMT400036750 PGSC0003DMT400036750 PGSC0003DMT400016496 PGSC0003DMT400016496 PGSC0003DMT400035266 PGSC0003DMT400035266 PGSC0003DMT400033268 PGSC0003DMT400033268
"PGSC0003DMT400004344" - LOL3 (LSD ONE LIKE 3) in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400004344LOL3 (LSD ONE LIKE 3) (370 aa)    
Predicted Functional Partners:
LSD1
Charged multivesicular body protein 2b-B (174 aa)
     
 
  0.520
PGSC0003DMT400078771
Protease Do-like 7 (168 aa)
           
  0.505
PGSC0003DMT400078769
DegP protease (213 aa)
           
  0.505
PGSC0003DMT400036750
Protease Do-like 7 (223 aa)
           
  0.505
PGSC0003DMT400051889
Transmembrane BAX inhibitor motif-containing protein (245 aa)
     
   
  0.472
PGSC0003DMT400049703
Receptor associated protein (242 aa)
     
   
  0.472
PGSC0003DMT400035266
BI1 (242 aa)
           
  0.472
PGSC0003DMT400033268
BI1 (246 aa)
           
  0.472
PGSC0003DMT400016496
Transmembrane BAX inhibitor motif-containing protein 4 (242 aa)
           
  0.472
PGSC0003DMT400032098
Monodehydroascorbate reductase (488 aa)
           
  0.414
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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