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PGSC0003DMT400061282 PGSC0003DMT400061282 PGSC0003DMT400009003 PGSC0003DMT400009003 PGSC0003DMT400004391 PGSC0003DMT400004391 PGSC0003DMT400017646 PGSC0003DMT400017646 PGSC0003DMT400088629 PGSC0003DMT400088629 PGSC0003DMT400037705 PGSC0003DMT400037705 PGSC0003DMT400039823 PGSC0003DMT400039823 PGSC0003DMT400039845 PGSC0003DMT400039845 PGSC0003DMT400018198 PGSC0003DMT400018198 rps7 rps7 PGSC0003DMT400018162 PGSC0003DMT400018162
"PGSC0003DMT400004391" - 50S ribosomal protein L5 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT40000439150S ribosomal protein L5 (266 aa)    
Predicted Functional Partners:
PGSC0003DMT400061282
EMB2394 (EMBRYO DEFECTIVE 2394) (227 aa)
   
  0.999
PGSC0003DMT400009003
50S ribosomal protein L6 (102 aa)
   
  0.999
rps7
30S ribosomal protein S7, chloroplastic; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit (145 aa)
 
  0.999
PGSC0003DMT400088629
30S ribosomal protein S7, chloroplastic (131 aa)
 
  0.999
PGSC0003DMT400017646
Ribosomal protein (341 aa)
 
  0.999
PGSC0003DMT400018162
50S ribosomal protein L4, chloroplastic (350 aa)
 
  0.999
PGSC0003DMT400039845
50S ribosomal protein L4 (312 aa)
 
  0.999
PGSC0003DMT400037705
50S ribosomal protein L15 (276 aa)
 
  0.999
PGSC0003DMT400018198
50S ribosomal protein L13, chloroplastic (234 aa)
 
  0.999
PGSC0003DMT400039823
50S ribosomal protein L13, chloroplastic (229 aa)
 
  0.999
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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