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PGSC0003DMT400019067 PGSC0003DMT400019067 PGSC0003DMT400065147 PGSC0003DMT400065147 PGSC0003DMT400058247 PGSC0003DMT400058247 PGSC0003DMT400052012 PGSC0003DMT400052012 PGSC0003DMT400054373 PGSC0003DMT400054373 PGSC0003DMT400067326 PGSC0003DMT400067326 PGSC0003DMT400015673 PGSC0003DMT400015673 PGSC0003DMT400004403 PGSC0003DMT400004403 PGSC0003DMT400063870 PGSC0003DMT400063870 PGSC0003DMT400040024 PGSC0003DMT400040024 PGSC0003DMT400032703 PGSC0003DMT400032703
"PGSC0003DMT400004403" - Transducin family protein / WD-40 repeat family protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400004403Transducin family protein / WD-40 repeat family protein (541 aa)    
Predicted Functional Partners:
PGSC0003DMT400032703
Ubiquitin carboxyl-terminal hydrolase (366 aa)
     
  0.988
PGSC0003DMT400063870
Nucleotide binding protein (504 aa)
     
  0.831
PGSC0003DMT400065147
Zinc finger (CCCH-type) protein (159 aa)
     
 
  0.716
PGSC0003DMT400040024
Anaphase-promoting complex; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle (191 aa)
       
  0.708
PGSC0003DMT400015673
Pescadillo; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (618 aa)
     
  0.707
PGSC0003DMT400054373
Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 (266 aa)
     
 
  0.702
PGSC0003DMT400067326
DNA cross-link repair protein pso2/snm1 (437 aa)
     
 
  0.673
PGSC0003DMT400058247
Conserved gene of unknown function (86 aa)
     
 
  0.673
PGSC0003DMT400052012
DNA cross-link repair protein pso2/snm1 (448 aa)
     
 
  0.673
PGSC0003DMT400019067
DNA cross-link repair protein pso2/snm1 (484 aa)
     
 
  0.673
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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