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PGSC0003DMT400040974 PGSC0003DMT400040974 PGSC0003DMT400012342 PGSC0003DMT400012342 PGSC0003DMT400020068 PGSC0003DMT400020068 PGSC0003DMT400097591 PGSC0003DMT400097591 PGSC0003DMT400019113 PGSC0003DMT400019113 PGSC0003DMT400006680 PGSC0003DMT400006680 PGSC0003DMT400005018 PGSC0003DMT400005018 PGSC0003DMT400035921 PGSC0003DMT400035921 PGSC0003DMT400019120 PGSC0003DMT400019120 PGSC0003DMT400022195 PGSC0003DMT400022195 PGSC0003DMT400016549 PGSC0003DMT400016549
"PGSC0003DMT400005018" - Charged multivesicular body protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400005018Charged multivesicular body protein (232 aa)    
Predicted Functional Partners:
PGSC0003DMT400019120
Vacuolar protein sorting-associated protein VPS4 (173 aa)
     
  0.979
PGSC0003DMT400019113
Vacuolar protein sorting-associated protein VPS4 (432 aa)
     
  0.979
PGSC0003DMT400020068
Developmental protein (203 aa)
     
  0.978
PGSC0003DMT400012342
Developmental protein (203 aa)
     
  0.978
PGSC0003DMT400006680
Developmental protein (203 aa)
     
  0.978
PGSC0003DMT400097591
Charged multivesicular body protein 4b (279 aa)
     
  0.977
PGSC0003DMT400040974
Charged multivesicular body protein 4b (1035 aa)
     
  0.977
PGSC0003DMT400022195
Charged multivesicular body protein 4b (491 aa)
     
  0.977
PGSC0003DMT400016549
Charged multivesicular body protein 4b (514 aa)
     
  0.977
PGSC0003DMT400035921
Charged multivesicular body protein 4b (388 aa)
     
0.968
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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