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PGSC0003DMT400087853 PGSC0003DMT400087853 PGSC0003DMT400074343 PGSC0003DMT400074343 PGSC0003DMT400005698 PGSC0003DMT400005698 PGSC0003DMT400074548 PGSC0003DMT400074548 PGSC0003DMT400080629 PGSC0003DMT400080629 PGSC0003DMT400054225 PGSC0003DMT400054225 PGSC0003DMT400018921 PGSC0003DMT400018921 PGSC0003DMT400071985 PGSC0003DMT400071985 PGSC0003DMT400002890 PGSC0003DMT400002890 PGSC0003DMT400042076 PGSC0003DMT400042076 PGSC0003DMT400070447 PGSC0003DMT400070447
"PGSC0003DMT400005698" - Peptidyl-tRNA hydrolase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400005698Peptidyl-tRNA hydrolase (194 aa)    
Predicted Functional Partners:
PGSC0003DMT400087853
Ornithine cyclodeaminase (325 aa)
     
      0.648
PGSC0003DMT400074343
Ornithine cyclodeaminase (325 aa)
     
      0.648
PGSC0003DMT400080629
ATP synthase subunit d (113 aa)
       
      0.613
PGSC0003DMT400074548
ATP synthase subunit d (261 aa)
       
      0.613
PGSC0003DMT400042076
40S ribosomal protein S15 (151 aa)
       
      0.591
PGSC0003DMT400018921
40S ribosomal protein S15 (151 aa)
       
      0.591
PGSC0003DMT400002890
40S ribosomal protein S15 (151 aa)
       
      0.591
PGSC0003DMT400054225
Ribosomal protein S19 (94 aa)
       
      0.532
PGSC0003DMT400071985
Ripening regulated protein DDTFR10 (110 aa)
   
   
  0.416
PGSC0003DMT400070447
Elongation factor 1B alpha-subunit (227 aa)
   
   
  0.416
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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