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PGSC0003DMT400083109 PGSC0003DMT400083109 PGSC0003DMT400032730 PGSC0003DMT400032730 PGSC0003DMT400077278 PGSC0003DMT400077278 PGSC0003DMT400074781 PGSC0003DMT400074781 PGSC0003DMT400006082 PGSC0003DMT400006082 PGSC0003DMT400062853 PGSC0003DMT400062853 PGSC0003DMT400082468 PGSC0003DMT400082468 PGSC0003DMT400040069 PGSC0003DMT400040069 PGSC0003DMT400057795 PGSC0003DMT400057795 PGSC0003DMT400000917 PGSC0003DMT400000917 PGSC0003DMT400033041 PGSC0003DMT400033041
"PGSC0003DMT400006082" - GYF domain-containing protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006082GYF domain-containing protein (730 aa)    
Predicted Functional Partners:
PGSC0003DMT400057795
Splicing factor U2af large subunit B (282 aa)
     
 
  0.546
PGSC0003DMT400040069
Splicing factor U2af large subunit B (311 aa)
     
 
  0.546
PGSC0003DMT400033041
U2 snRNP auxiliary factor large subunit (556 aa)
     
 
  0.546
PGSC0003DMT400000917
Splicing factor U2af large subunit B (605 aa)
     
 
  0.546
PGSC0003DMT400074781
Conserved gene of unknown function (498 aa)
           
  0.515
PGSC0003DMT400032730
F-box family protein (475 aa)
           
  0.515
PGSC0003DMT400083109
Putative anti-virus transcriptional factor (354 aa)
     
 
  0.405
PGSC0003DMT400082468
RNA recognition motif-containing protein (866 aa)
     
 
  0.405
PGSC0003DMT400077278
RNA recognition motif-containing protein (1035 aa)
     
 
  0.405
PGSC0003DMT400062853
Putative anti-virus transcriptional factor (348 aa)
     
 
  0.405
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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