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PGSC0003DMT400080123 PGSC0003DMT400080123 PGSC0003DMT400014538 PGSC0003DMT400014538 PGSC0003DMT400078468 PGSC0003DMT400078468 PGSC0003DMT400066026 PGSC0003DMT400066026 PGSC0003DMT400059790 PGSC0003DMT400059790 PGSC0003DMT400045695 PGSC0003DMT400045695 PGSC0003DMT400079491 PGSC0003DMT400079491 PGSC0003DMT400003012 PGSC0003DMT400003012 PGSC0003DMT400006153 PGSC0003DMT400006153 PGSC0003DMT400054570 PGSC0003DMT400054570 PGSC0003DMT400045761 PGSC0003DMT400045761
"PGSC0003DMT400006153" - Dead box ATP-dependent RNA helicase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006153Dead box ATP-dependent RNA helicase (534 aa)    
Predicted Functional Partners:
PGSC0003DMT400003012
Conserved gene of unknown function (620 aa)
     
      0.990
PGSC0003DMT400045695
Gene of unknown function (98 aa)
   
 
  0.988
PGSC0003DMT400045761
Peroxidase 31 (747 aa)
     
      0.986
PGSC0003DMT400080123
Conserved gene of unknown function (713 aa)
     
      0.985
PGSC0003DMT400079491
RNA-binding protein (197 aa)
     
 
  0.979
PGSC0003DMT400054570
Dead box ATP-dependent RNA helicase (587 aa)
   
 
0.979
PGSC0003DMT400014538
WD-repeat protein (892 aa)
     
      0.976
PGSC0003DMT400078468
WD-repeat protein (505 aa)
     
        0.976
PGSC0003DMT400066026
WD-repeat protein (950 aa)
     
        0.976
PGSC0003DMT400059790
WD-repeat protein (184 aa)
     
        0.976
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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