Full Link:
STRINGSTRING
PGSC0003DMT400023048 PGSC0003DMT400023048 PGSC0003DMT400051953 PGSC0003DMT400051953 PGSC0003DMT400076609 PGSC0003DMT400076609 PGSC0003DMT400056668 PGSC0003DMT400056668 PGSC0003DMT400053681 PGSC0003DMT400053681 PGSC0003DMT400006250 PGSC0003DMT400006250 PGSC0003DMT400034739 PGSC0003DMT400034739 PGSC0003DMT400060016 PGSC0003DMT400060016 PGSC0003DMT400057924 PGSC0003DMT400057924 PGSC0003DMT400042226 PGSC0003DMT400042226 PGSC0003DMT400015638 PGSC0003DMT400015638
"PGSC0003DMT400006250" - DNA binding protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006250DNA binding protein (180 aa)    
Predicted Functional Partners:
PGSC0003DMT400056668
Transcription factor S-II domain-containing protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (121 aa)
     
  0.996
PGSC0003DMT400076609
DNA-directed RNA polymerase I/III subunits (393 aa)
     
  0.992
PGSC0003DMT400053681
RNApol24 (105 aa)
     
  0.981
PGSC0003DMT400034739
RNApol24 (105 aa)
     
  0.981
PGSC0003DMT400060016
MAR-binding protein (541 aa)
     
 
  0.981
PGSC0003DMT400015638
MAR-binding protein (548 aa)
     
 
  0.981
PGSC0003DMT400023048
DNA-directed RNA polymerase IIa (144 aa)
     
  0.977
PGSC0003DMT400051953
DNA-directed RNA polymerases I, II, and III subunit RPABC5 (73 aa)
     
  0.976
PGSC0003DMT400057924
60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly (187 aa)
     
        0.976
PGSC0003DMT400042226
U3 small nucleolar ribonucleoprotein protein imp4 (324 aa)
     
        0.976
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (2%)