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PGSC0003DMT400020315 PGSC0003DMT400020315 PGSC0003DMT400076427 PGSC0003DMT400076427 PGSC0003DMT400052643 PGSC0003DMT400052643 PGSC0003DMT400079335 PGSC0003DMT400079335 rpoC1 rpoC1 PGSC0003DMT400067873 PGSC0003DMT400067873 PGSC0003DMT400006325 PGSC0003DMT400006325 PGSC0003DMT400045546 PGSC0003DMT400045546 rpoC2 rpoC2 PGSC0003DMT400004391 PGSC0003DMT400004391 PGSC0003DMT400027379 PGSC0003DMT400027379
"PGSC0003DMT400006325" - DNA-directed RNA polymerase subunit alpha in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006325DNA-directed RNA polymerase subunit alpha (300 aa)    
Predicted Functional Partners:
PGSC0003DMT400004391
50S ribosomal protein L5 (266 aa)
 
   
  0.990
rpoC1
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (418 aa)
 
  0.988
PGSC0003DMT400067873
Ribosomal protein L11 (181 aa)
   
   
  0.988
PGSC0003DMT400052643
Ribosomal protein L11 (181 aa)
   
   
  0.988
PGSC0003DMT400027379
Ribosomal protein L11 (181 aa)
   
   
  0.988
PGSC0003DMT400020315
Ribosomal protein L11 (181 aa)
   
   
  0.988
PGSC0003DMT400045546
DNA-directed RNA polymerase subunit beta’’ (438 aa)
   
  0.983
rpoC2
DNA-directed RNA polymerase subunit beta’’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (482 aa)
   
  0.982
PGSC0003DMT400079335
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1254 aa)
   
  0.981
PGSC0003DMT400076427
DNA-directed RNA polymerase II subunit RPB2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1191 aa)
   
  0.981
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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