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PGSC0003DMT400084951 PGSC0003DMT400084951 PGSC0003DMT400046777 PGSC0003DMT400046777 PGSC0003DMT400079377 PGSC0003DMT400079377 PGSC0003DMT400077134 PGSC0003DMT400077134 PGSC0003DMT400006365 PGSC0003DMT400006365 PGSC0003DMT400077797 PGSC0003DMT400077797 PGSC0003DMT400070785 PGSC0003DMT400070785 PGSC0003DMT400078695 PGSC0003DMT400078695 PGSC0003DMT400003363 PGSC0003DMT400003363 PGSC0003DMT400053830 PGSC0003DMT400053830 PGSC0003DMT400067285 PGSC0003DMT400067285
"PGSC0003DMT400006365" - PHD1 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006365PHD1 (276 aa)    
Predicted Functional Partners:
PGSC0003DMT400070785
Nucleotide binding protein (530 aa)
       
 
  0.943
PGSC0003DMT400077134
SPla/RYanodine receptor domain-containing protein (479 aa)
     
 
  0.941
PGSC0003DMT400084951
SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding (362 aa)
     
 
  0.896
PGSC0003DMT400067285
SET domain-containing protein (203 aa)
     
 
  0.896
PGSC0003DMT400053830
SET domain protein (269 aa)
     
 
  0.896
PGSC0003DMT400046777
Trithorax (643 aa)
     
 
  0.896
PGSC0003DMT400003363
SDG14 (SET DOMAIN PROTEIN 14); DNA binding / protein binding / zinc ion binding (435 aa)
     
 
  0.896
PGSC0003DMT400079377
WD-repeat protein (1134 aa)
       
 
  0.762
PGSC0003DMT400078695
WD-repeat protein (314 aa)
       
 
  0.762
PGSC0003DMT400077797
WD-repeat protein (97 aa)
       
 
  0.762
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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