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PGSC0003DMT400072406 PGSC0003DMT400072406 PGSC0003DMT400034226 PGSC0003DMT400034226 PGSC0003DMT400064159 PGSC0003DMT400064159 PGSC0003DMT400004146 PGSC0003DMT400004146 PGSC0003DMT400003012 PGSC0003DMT400003012 PGSC0003DMT400025837 PGSC0003DMT400025837 PGSC0003DMT400003681 PGSC0003DMT400003681 PGSC0003DMT400017459 PGSC0003DMT400017459 PGSC0003DMT400009959 PGSC0003DMT400009959 PGSC0003DMT400006437 PGSC0003DMT400006437 PGSC0003DMT400009961 PGSC0003DMT400009961
"PGSC0003DMT400006437" - RNA m5u methyltransferase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PGSC0003DMT400006437RNA m5u methyltransferase (639 aa)    
Predicted Functional Partners:
PGSC0003DMT400004146
Transducin family protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (437 aa)
     
        0.829
PGSC0003DMT400003681
Transducin family protein; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (440 aa)
     
        0.829
PGSC0003DMT400003012
Conserved gene of unknown function (620 aa)
     
        0.825
PGSC0003DMT400072406
Brix domain containing protein (317 aa)
     
        0.732
PGSC0003DMT400017459
WD-repeat protein (907 aa)
     
        0.730
PGSC0003DMT400025837
Ribosome biogenesis protein tsr1 (790 aa)
     
        0.727
PGSC0003DMT400064159
Ribosome biogenesis protein bop1; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (752 aa)
     
        0.725
PGSC0003DMT400034226
WD40-repeat protein (251 aa)
     
        0.719
PGSC0003DMT400009961
U3 small nucleolar RNA-associated protein (61 aa)
     
        0.719
PGSC0003DMT400009959
U3 small nucleolar RNA-associated protein (138 aa)
     
        0.719
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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