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PGSC0003DMT400093930 PGSC0003DMT400093930 PGSC0003DMT400044115 PGSC0003DMT400044115 PGSC0003DMT400021476 PGSC0003DMT400021476 PGSC0003DMT400091164 PGSC0003DMT400091164 PGSC0003DMT400006454 PGSC0003DMT400006454 PGSC0003DMT400089560 PGSC0003DMT400089560 PGSC0003DMT400042444 PGSC0003DMT400042444 PGSC0003DMT400025530 PGSC0003DMT400025530 PGSC0003DMT400077007 PGSC0003DMT400077007 RPB1 RPB1 PGSC0003DMT400022171 PGSC0003DMT400022171
"PGSC0003DMT400006454" - RNA polymerase II mediator complex subunit in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006454RNA polymerase II mediator complex subunit (247 aa)    
Predicted Functional Partners:
PGSC0003DMT400025530
Cofactor required for Sp1 transcriptional activation subunit (185 aa)
     
  0.987
PGSC0003DMT400021476
Mediator complex subunit SOH1 (201 aa)
     
  0.984
PGSC0003DMT400042444
Mediator of RNA polymerase II transcription subunit 21 (138 aa)
     
  0.983
PGSC0003DMT400093930
Nut2 (124 aa)
     
  0.976
PGSC0003DMT400091164
Nut2 (128 aa)
     
  0.976
PGSC0003DMT400089560
Nut2 (130 aa)
     
  0.976
PGSC0003DMT400077007
Nut2 (201 aa)
     
  0.976
PGSC0003DMT400044115
Nut2 (122 aa)
     
  0.976
PGSC0003DMT400022171
Nut2 (124 aa)
     
  0.976
RPB1
NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1839 aa)
       
 
  0.965
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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