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PGSC0003DMT400025497 PGSC0003DMT400025497 PGSC0003DMT400089754 PGSC0003DMT400089754 PGSC0003DMT400046775 PGSC0003DMT400046775 PGSC0003DMT400058580 PGSC0003DMT400058580 PGSC0003DMT400077824 PGSC0003DMT400077824 PGSC0003DMT400011160 PGSC0003DMT400011160 PGSC0003DMT400077823 PGSC0003DMT400077823 PGSC0003DMT400006495 PGSC0003DMT400006495 PGSC0003DMT400032040 PGSC0003DMT400032040 PGSC0003DMT400033102 PGSC0003DMT400033102 PGSC0003DMT400039840 PGSC0003DMT400039840
"PGSC0003DMT400006495" - Nucleoporin NUP53 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006495Nucleoporin NUP53 (335 aa)    
Predicted Functional Partners:
PGSC0003DMT400033102
Nucleoporin interacting component; Protein prenyltransferase (850 aa)
     
  0.919
PGSC0003DMT400077824
Nuclear pore complex protein nup93 (180 aa)
     
  0.919
PGSC0003DMT400077823
Nuclear pore complex protein nup93 (124 aa)
     
  0.919
PGSC0003DMT400011160
Conserved gene of unknown function (72 aa)
     
  0.915
PGSC0003DMT400032040
WD40 repeat nucleoporin similar to SEH1 (363 aa)
     
  0.854
PGSC0003DMT400058580
Conserved gene of unknown function (317 aa)
     
  0.794
PGSC0003DMT400089754
Ubiquitin carrier protein (61 aa)
     
    0.781
PGSC0003DMT400046775
Ubiquitin carrier protein (161 aa)
     
    0.781
PGSC0003DMT400039840
Ubiquitin carrier protein (160 aa)
     
    0.781
PGSC0003DMT400025497
Ubiquitin carrier protein (138 aa)
     
    0.781
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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