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PGSC0003DMT400028530 PGSC0003DMT400028530 PGSC0003DMT400094468 PGSC0003DMT400094468 AN11 AN11 PGSC0003DMT400033569 PGSC0003DMT400033569 PGSC0003DMT400001513 PGSC0003DMT400001513 PGSC0003DMT400006770 PGSC0003DMT400006770 PGSC0003DMT400078776 PGSC0003DMT400078776 PGSC0003DMT400073955 PGSC0003DMT400073955 PGSC0003DMT400047076 PGSC0003DMT400047076 PGSC0003DMT400040774 PGSC0003DMT400040774
"PGSC0003DMT400006770" - Homeobox protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006770Homeobox protein (772 aa)    
Predicted Functional Partners:
PGSC0003DMT400033569
Anthocyanin 1 (590 aa)
     
   
  0.526
PGSC0003DMT400094468
Transparent testa glabra 1 (343 aa)
           
  0.515
PGSC0003DMT400073955
Conserved gene of unknown function (719 aa)
           
  0.515
AN11
Transparent testa glabra 1 (342 aa)
           
  0.515
PGSC0003DMT400001513
Transparent testa glabra 1 (342 aa)
           
  0.515
PGSC0003DMT400028530
WRKY 13 (467 aa)
     
   
  0.503
PGSC0003DMT400078776
DNA binding protein (317 aa)
           
  0.463
PGSC0003DMT400047076
MYB domain class transcription factor (426 aa)
     
 
  0.415
PGSC0003DMT400040774
Myb-like transcription factor (407 aa)
     
 
  0.415
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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