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PGSC0003DMT400081282 PGSC0003DMT400081282 PGSC0003DMT400009660 PGSC0003DMT400009660 PGSC0003DMT400053380 PGSC0003DMT400053380 PGSC0003DMT400061752 PGSC0003DMT400061752 PGSC0003DMT400056570 PGSC0003DMT400056570 PGSC0003DMT400006798 PGSC0003DMT400006798 PGSC0003DMT400057711 PGSC0003DMT400057711 PGSC0003DMT400031965 PGSC0003DMT400031965 PGSC0003DMT400006151 PGSC0003DMT400006151 PGSC0003DMT400029517 PGSC0003DMT400029517 PGSC0003DMT400014832 PGSC0003DMT400014832
"PGSC0003DMT400006798" - Auxin-responsive protein IAA1 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006798Auxin-responsive protein IAA1; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (212 aa)    
Predicted Functional Partners:
PGSC0003DMT400006151
Auxin response factor 7; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (1157 aa)
         
  0.803
PGSC0003DMT400081282
Auxin response factor 3; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (748 aa)
         
    0.800
PGSC0003DMT400061752
Transport inhibitor response 1 (580 aa)
         
    0.800
PGSC0003DMT400057711
F-box family protein (589 aa)
         
    0.800
PGSC0003DMT400056570
Transport inhibitor response 1 (594 aa)
         
    0.800
PGSC0003DMT400053380
Auxin response factor 1; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (654 aa)
         
 
0.800
PGSC0003DMT400031965
Auxin response factor 9; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (655 aa)
         
    0.800
PGSC0003DMT400029517
TIR1 (581 aa)
         
    0.800
PGSC0003DMT400014832
Auxin response factor 9; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (382 aa)
         
 
0.800
PGSC0003DMT400009660
Auxin response factor 5; Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5’-TGTCTC-3’ found in the auxin-responsive promoter elements (AuxREs) (929 aa)
         
    0.800
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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