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PGSC0003DMT400014704 PGSC0003DMT400014704 PGSC0003DMT400047073 PGSC0003DMT400047073 PGSC0003DMT400018710 PGSC0003DMT400018710 PGSC0003DMT400043928 PGSC0003DMT400043928 PGSC0003DMT400045745 PGSC0003DMT400045745 PGSC0003DMT400037075 PGSC0003DMT400037075 PGSC0003DMT400047980 PGSC0003DMT400047980 PGSC0003DMT400006875 PGSC0003DMT400006875 PGSC0003DMT400009382 PGSC0003DMT400009382 PGSC0003DMT400033230 PGSC0003DMT400033230 PGSC0003DMT400036518 PGSC0003DMT400036518
"PGSC0003DMT400006875" - Meiotic recombination repair protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400006875Meiotic recombination repair protein (304 aa)    
Predicted Functional Partners:
PGSC0003DMT400047980
Serine/threonine-protein kinase ATR (141 aa)
     
  0.984
PGSC0003DMT400036518
Ku70 homolog (286 aa)
     
  0.981
PGSC0003DMT400047073
Endonuclease (202 aa)
   
  0.976
PGSC0003DMT400043928
DNA binding protein (603 aa)
   
  0.976
PGSC0003DMT400037075
Flap endonuclease GEN-like 2 (600 aa)
   
  0.976
PGSC0003DMT400033230
Ku P80 DNA helicase; Single-stranded DNA-dependent ATP-dependent helicase (710 aa)
     
  0.975
PGSC0003DMT400009382
Cell cycle checkpoint protein RAD17 (501 aa)
     
  0.970
PGSC0003DMT400045745
Nibrin (618 aa)
     
  0.966
PGSC0003DMT400018710
Exonuclease 1 (778 aa)
   
  0.957
PGSC0003DMT400014704
Exonuclease (542 aa)
   
  0.957
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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