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PGSC0003DMT400058161 PGSC0003DMT400058161 PGSC0003DMT400085883 PGSC0003DMT400085883 PGSC0003DMT400014369 PGSC0003DMT400014369 PGSC0003DMT400007162 PGSC0003DMT400007162 PGSC0003DMT400029953 PGSC0003DMT400029953 PGSC0003DMT400023040 PGSC0003DMT400023040 PGSC0003DMT400023450 PGSC0003DMT400023450 PGSC0003DMT400011665 PGSC0003DMT400011665 PGSC0003DMT400063604 PGSC0003DMT400063604 PGSC0003DMT400047178 PGSC0003DMT400047178 PGSC0003DMT400014424 PGSC0003DMT400014424
"PGSC0003DMT400007162" - Microfibril-associated protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400007162Microfibril-associated protein (430 aa)    
Predicted Functional Partners:
PGSC0003DMT400085883
Zinc finger CCCH domain-containing protein 42 (145 aa)
     
      0.990
PGSC0003DMT400014369
Zinc finger CCCH domain-containing protein 42 (352 aa)
     
      0.990
PGSC0003DMT400063604
PRP38 (377 aa)
     
 
  0.981
PGSC0003DMT400014424
Pre-mRNA-splicing factor SPF27 homolog (251 aa)
     
 
  0.978
PGSC0003DMT400023450
Splicing factor 3a (509 aa)
     
      0.970
PGSC0003DMT400029953
CDC5 (986 aa)
     
      0.969
PGSC0003DMT400058161
Conserved gene of unknown function (571 aa)
     
      0.969
PGSC0003DMT400011665
Dead box ATP-dependent RNA helicase (1115 aa)
     
      0.968
PGSC0003DMT400047178
Pre-mRNA splicing factor (1019 aa)
     
      0.967
PGSC0003DMT400023040
PP1/PP2A phosphatases pleiotropic regulator PRL1 (307 aa)
     
      0.966
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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