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PGSC0003DMT400019229 PGSC0003DMT400019229 PGSC0003DMT400049172 PGSC0003DMT400049172 PGSC0003DMT400054703 PGSC0003DMT400054703 PGSC0003DMT400073985 PGSC0003DMT400073985 PGSC0003DMT400007171 PGSC0003DMT400007171 PGSC0003DMT400054702 PGSC0003DMT400054702 PGSC0003DMT400059968 PGSC0003DMT400059968 PGSC0003DMT400032834 PGSC0003DMT400032834 PGSC0003DMT400018869 PGSC0003DMT400018869 PGSC0003DMT400048466 PGSC0003DMT400048466 PGSC0003DMT400025795 PGSC0003DMT400025795
"PGSC0003DMT400007171" - Ribosomal pseudouridine synthase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
PGSC0003DMT400007171Ribosomal pseudouridine synthase (302 aa)    
Predicted Functional Partners:
PGSC0003DMT400059968
Phenylalanyl-tRNA synthetase (434 aa)
   
 
  0.566
PGSC0003DMT400073985
Methionyl-tRNA synthetase (812 aa)
   
   
  0.549
PGSC0003DMT400049172
Methionyl-tRNA synthetase (244 aa)
     
   
  0.547
PGSC0003DMT400032834
TRNA-pseudouridine synthase (542 aa)
   
   
  0.522
PGSC0003DMT400018869
H/ACA ribonucleoprotein complex subunit 4 (573 aa)
   
   
  0.522
PGSC0003DMT400054703
Glutamyl-tRNA(Gln) amidotransferase subunit A (347 aa)
   
 
  0.516
PGSC0003DMT400054702
Glu-tRNA(Gln) amidotransferase subunit A (512 aa)
   
 
  0.516
PGSC0003DMT400019229
Pseudouridine synthase family protein (413 aa)
   
  0.512
PGSC0003DMT400048466
Pseudouridine synthase (131 aa)
   
   
  0.505
PGSC0003DMT400025795
Pseudouridylate synthase (569 aa)
   
   
  0.505
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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