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PGSC0003DMT400032474 PGSC0003DMT400032474 PGSC0003DMT400002367 PGSC0003DMT400002367 PGSC0003DMT400093830 PGSC0003DMT400093830 PGSC0003DMT400007299 PGSC0003DMT400007299 PGSC0003DMT400036459 PGSC0003DMT400036459 PGSC0003DMT400032554 PGSC0003DMT400032554 PGSC0003DMT400064032 PGSC0003DMT400064032
"PGSC0003DMT400007299" - 3-5 exonuclease in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
PGSC0003DMT4000072993-5 exonuclease (501 aa)    
Predicted Functional Partners:
PGSC0003DMT400002367
RNA binding protein; 3’-5’-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3’ end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3’ (1092 aa)
     
   
  0.439
PGSC0003DMT400093830
3-5 exonuclease (205 aa)
     
   
  0.420
PGSC0003DMT400064032
3-5 exonuclease (215 aa)
     
   
  0.420
PGSC0003DMT400036459
3-5 exonuclease/ nucleic acid binding protein (216 aa)
     
   
  0.420
PGSC0003DMT400032554
3-5 exonuclease/ nucleic acid binding protein (252 aa)
     
   
  0.420
PGSC0003DMT400032474
Conserved gene of unknown function (233 aa)
     
   
  0.420
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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