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PGSC0003DMT400054225 PGSC0003DMT400054225 PGSC0003DMT400067516 PGSC0003DMT400067516 PGSC0003DMT400042234 PGSC0003DMT400042234 PGSC0003DMT400008133 PGSC0003DMT400008133 PGSC0003DMT400059174 PGSC0003DMT400059174 PGSC0003DMT400073985 PGSC0003DMT400073985 PGSC0003DMT400007946 PGSC0003DMT400007946 PGSC0003DMT400002890 PGSC0003DMT400002890 PGSC0003DMT400017765 PGSC0003DMT400017765 PGSC0003DMT400042076 PGSC0003DMT400042076 PGSC0003DMT400018921 PGSC0003DMT400018921
"PGSC0003DMT400007946" - 16S rRNA processing protein RimM family in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
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Textmining
[Homology]
Score
PGSC0003DMT40000794616S rRNA processing protein RimM family (645 aa)    
Predicted Functional Partners:
PGSC0003DMT400054225
Ribosomal protein S19 (94 aa)
     
 
  0.923
PGSC0003DMT400042076
40S ribosomal protein S15 (151 aa)
     
 
  0.923
PGSC0003DMT400018921
40S ribosomal protein S15 (151 aa)
     
 
  0.923
PGSC0003DMT400002890
40S ribosomal protein S15 (151 aa)
     
 
  0.923
PGSC0003DMT400059174
30S ribosomal protein S16 (112 aa)
   
   
  0.702
PGSC0003DMT400008133
Elongation factor Ts; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome (1050 aa)
   
   
  0.678
PGSC0003DMT400067516
50S ribosomal protein L19-2, chloroplastic (222 aa)
   
   
  0.568
PGSC0003DMT400042234
L19 ribosomal protein (346 aa)
   
   
  0.568
PGSC0003DMT400017765
Conserved gene of unknown function (338 aa)
   
   
  0.554
PGSC0003DMT400073985
Methionyl-tRNA synthetase (812 aa)
     
   
  0.540
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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