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rpoC1 rpoC1 PGSC0003DMT400045546 PGSC0003DMT400045546 PGSC0003DMT400020691 PGSC0003DMT400020691 PGSC0003DMT400061503 PGSC0003DMT400061503 rpoC2 rpoC2 PGSC0003DMT400034735 PGSC0003DMT400034735 PGSC0003DMT400028535 PGSC0003DMT400028535 PGSC0003DMT400007978 PGSC0003DMT400007978 PGSC0003DMT400052305 PGSC0003DMT400052305 PGSC0003DMT400004376 PGSC0003DMT400004376 PGSC0003DMT400020695 PGSC0003DMT400020695
"PGSC0003DMT400007978" - NLI interacting factor in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400007978NLI interacting factor (NIF) family protein (437 aa)    
Predicted Functional Partners:
PGSC0003DMT400034735
Tfiif-alpha (501 aa)
     
  0.932
PGSC0003DMT400061503
Lipin family protein (895 aa)
     
  0.855
PGSC0003DMT400028535
Type-1 phosphatidic acid phosphohydrolase 1 (866 aa)
     
  0.855
PGSC0003DMT400020695
Lipin family protein (327 aa)
     
  0.855
PGSC0003DMT400020691
Lipin family protein (987 aa)
     
  0.855
PGSC0003DMT400004376
Lipin family protein (162 aa)
     
  0.855
rpoC1
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (418 aa)
       
  0.760
PGSC0003DMT400052305
DNA-directed RNA polymerase subunit beta’’ (119 aa)
       
  0.760
rpoC2
DNA-directed RNA polymerase subunit beta’’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (482 aa)
       
  0.760
PGSC0003DMT400045546
DNA-directed RNA polymerase subunit beta’’ (438 aa)
       
  0.760
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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