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PGSC0003DMT400000852 PGSC0003DMT400000852 PGSC0003DMT400009121 PGSC0003DMT400009121 PGSC0003DMT400073398 PGSC0003DMT400073398 PGSC0003DMT400051049 PGSC0003DMT400051049 PGSC0003DMT400008182 PGSC0003DMT400008182 PGSC0003DMT400060308 PGSC0003DMT400060308 PGSC0003DMT400078290 PGSC0003DMT400078290 PGSC0003DMT400035590 PGSC0003DMT400035590 PAL-1 PAL-1 CHS2 CHS2 PGSC0003DMT400080765 PGSC0003DMT400080765
"PGSC0003DMT400008182" - 4-coumarate:CoA ligase in Solanum tuberosum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
PGSC0003DMT4000081824-coumarate-CoA ligase (569 aa)    
Predicted Functional Partners:
PGSC0003DMT400078290
Cinnamic acid 4-hydroxylase (505 aa)
   
 
  0.959
PGSC0003DMT400000852
Aldehyde dehydrogenase (500 aa)
   
  0.936
PGSC0003DMT400073398
Cinnamoyl-CoA reductase (332 aa)
   
 
  0.935
PGSC0003DMT400051049
Cinnamoyl CoA reductase (332 aa)
   
 
  0.935
PGSC0003DMT400060308
Phenylalanine ammonia-lyase (707 aa)
   
 
  0.935
PAL-1
Phenylalanine ammonia-lyase; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton (719 aa)
   
 
  0.935
PGSC0003DMT400035590
Elicitor-inducible cytochrome P450 (444 aa)
   
 
  0.935
PGSC0003DMT400009121
Ferulate-5-hydroxylase (519 aa)
   
 
  0.935
CHS2
Chalcone synthase 2; The primary product of this enzyme is 4,2’,4’,6’- tetrahydroxychalcone (also termed naringenin-chalcone or chalcone) which can under specific conditions spontaneously isomerize into naringenin (389 aa)
   
 
  0.931
PGSC0003DMT400080765
Phenylalanine ammonia-lyase 1; This is a key enzyme of plant metabolism catalyzing the first reaction in the biosynthesis from L-phenylalanine of a wide variety of natural products based on the phenylpropane skeleton (435 aa)
       
    0.912
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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