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PGSC0003DMT400026512 PGSC0003DMT400026512 PGSC0003DMT400066521 PGSC0003DMT400066521 PGSC0003DMT400056692 PGSC0003DMT400056692 PGSC0003DMT400075431 PGSC0003DMT400075431 PGSC0003DMT400008334 PGSC0003DMT400008334 PGSC0003DMT400017726 PGSC0003DMT400017726 PGSC0003DMT400057595 PGSC0003DMT400057595 PGSC0003DMT400036729 PGSC0003DMT400036729 PGSC0003DMT400044280 PGSC0003DMT400044280 PGSC0003DMT400081386 PGSC0003DMT400081386 PGSC0003DMT400078262 PGSC0003DMT400078262
"PGSC0003DMT400008334" - RNA-binding protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400008334RNA-binding protein (393 aa)    
Predicted Functional Partners:
PGSC0003DMT400056692
ATP-dependent RNA helicase (1141 aa)
     
  0.954
PGSC0003DMT400066521
Phosphoribosylformylglycinamidine synthase (914 aa)
   
      0.906
PGSC0003DMT400026512
Phosphoribosylformylglycinamidine synthase (1410 aa)
   
      0.906
PGSC0003DMT400057595
Conserved gene of unknown function (580 aa)
       
  0.896
PGSC0003DMT400036729
U2 small nuclear ribonucleoprotein A (286 aa)
       
  0.892
PGSC0003DMT400017726
XPA-binding protein (915 aa)
     
  0.884
PGSC0003DMT400075431
Pre-mRNA-splicing factor (451 aa)
     
  0.882
PGSC0003DMT400044280
Pre-mRNA-splicing factor (521 aa)
     
  0.882
PGSC0003DMT400081386
U1snRNP-specific protein, U1A (253 aa)
     
  0.880
PGSC0003DMT400078262
Spliceosomal protein (232 aa)
     
  0.880
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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