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PGSC0003DMT400010758 PGSC0003DMT400010758 PGSC0003DMT400083256 PGSC0003DMT400083256 PGSC0003DMT400008347 PGSC0003DMT400008347 PGSC0003DMT400060214 PGSC0003DMT400060214 PGSC0003DMT400019150 PGSC0003DMT400019150 PGSC0003DMT400078228 PGSC0003DMT400078228 PGSC0003DMT400076182 PGSC0003DMT400076182 PGSC0003DMT400029096 PGSC0003DMT400029096 PGSC0003DMT400085198 PGSC0003DMT400085198 PGSC0003DMT400059840 PGSC0003DMT400059840 PGSC0003DMT400030563 PGSC0003DMT400030563
"PGSC0003DMT400008347" - Pre-mRNA splicing factor in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400008347Pre-mRNA splicing factor (321 aa)    
Predicted Functional Partners:
PGSC0003DMT400078228
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (318 aa)
     
  0.999
PGSC0003DMT400076182
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (280 aa)
     
  0.999
PGSC0003DMT400060214
P0 ribosomal protein; Ribosomal protein P0 is the functional equivalent of E.coli protein L10 (320 aa)
     
  0.999
PGSC0003DMT400085198
60s acidic ribosomal protein (118 aa)
     
  0.999
PGSC0003DMT400030563
60S acidic ribosomal protein (111 aa)
     
  0.999
PGSC0003DMT400029096
60s acidic ribosomal protein (112 aa)
     
  0.999
PGSC0003DMT400019150
60s acidic ribosomal protein (116 aa)
     
  0.999
PGSC0003DMT400059840
60S ribosomal protein L27 (118 aa)
     
  0.997
PGSC0003DMT400010758
60S ribosomal protein L27 (222 aa)
     
  0.997
PGSC0003DMT400083256
60S ribosomal protein L15 (204 aa)
     
  0.997
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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