Full Link:
STRINGSTRING
PGSC0003DMT400076252 PGSC0003DMT400076252 PGSC0003DMT400073955 PGSC0003DMT400073955 PGSC0003DMT400066186 PGSC0003DMT400066186 PGSC0003DMT400069419 PGSC0003DMT400069419 PGSC0003DMT400068240 PGSC0003DMT400068240 PGSC0003DMT400008563 PGSC0003DMT400008563 PGSC0003DMT400046818 PGSC0003DMT400046818 PGSC0003DMT400009171 PGSC0003DMT400009171 PGSC0003DMT400026654 PGSC0003DMT400026654 PGSC0003DMT400023383 PGSC0003DMT400023383 PGSC0003DMT400044363 PGSC0003DMT400044363
"PGSC0003DMT400008563" - Chromatin binding protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400008563Chromatin binding protein (227 aa)    
Predicted Functional Partners:
PGSC0003DMT400023383
DNA methyltransferase 1-associated protein (449 aa)
     
  0.973
PGSC0003DMT400073955
Conserved gene of unknown function (719 aa)
     
 
  0.967
PGSC0003DMT400066186
Homeobox protein HAT3.1 (578 aa)
     
 
  0.967
PGSC0003DMT400009171
Inositol or phosphatidylinositol kinase (102 aa)
     
  0.952
PGSC0003DMT400076252
Histone deacetylase (536 aa)
     
  0.950
PGSC0003DMT400069419
HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (471 aa)
     
  0.950
PGSC0003DMT400068240
Histone deacetylase (397 aa)
     
  0.950
PGSC0003DMT400046818
Histone deacetylase (456 aa)
     
  0.950
PGSC0003DMT400044363
Conserved gene of unknown function (170 aa)
     
  0.948
PGSC0003DMT400026654
Conserved gene of unknown function (144 aa)
     
  0.948
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (3%)