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PGSC0003DMT400066245 PGSC0003DMT400066245 PGSC0003DMT400017290 PGSC0003DMT400017290 PGSC0003DMT400012508 PGSC0003DMT400012508 PGSC0003DMT400041996 PGSC0003DMT400041996 PGSC0003DMT400054373 PGSC0003DMT400054373 PGSC0003DMT400008583 PGSC0003DMT400008583 PGSC0003DMT400077919 PGSC0003DMT400077919 PGSC0003DMT400065147 PGSC0003DMT400065147 PGSC0003DMT400033572 PGSC0003DMT400033572 PGSC0003DMT400039842 PGSC0003DMT400039842 PGSC0003DMT400026767 PGSC0003DMT400026767
"PGSC0003DMT400008583" - RNA-binding protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400008583RNA-binding protein (598 aa)    
Predicted Functional Partners:
PGSC0003DMT400054373
Isoform 2 of Cleavage and polyadenylation specificity factor CPSF30 (266 aa)
     
 
  0.906
PGSC0003DMT400033572
MRNA splicing factor (406 aa)
       
 
  0.682
PGSC0003DMT400041996
Serine/threonine-protein phosphatase (344 aa)
     
      0.634
PGSC0003DMT400017290
Serine/threonine-protein phosphatase PP1 isozyme 3 (304 aa)
     
      0.634
PGSC0003DMT400026767
MRNA splicing factor (509 aa)
       
 
0.590
PGSC0003DMT400066245
Poly(A)-binding protein; Binds the poly(A) tail of mRNA (643 aa)
     
  0.587
PGSC0003DMT400039842
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA (600 aa)
     
  0.587
PGSC0003DMT400012508
Polyadenylate-binding protein (124 aa)
     
  0.587
PGSC0003DMT400065147
Zinc finger (CCCH-type) protein (159 aa)
       
 
  0.551
PGSC0003DMT400077919
CCR4-NOT transcription complex subunit (670 aa)
     
      0.540
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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