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PGSC0003DMT400042209 PGSC0003DMT400042209 PGSC0003DMT400019013 PGSC0003DMT400019013 PGSC0003DMT400074006 PGSC0003DMT400074006 PGSC0003DMT400089240 PGSC0003DMT400089240 PGSC0003DMT400008694 PGSC0003DMT400008694 PGSC0003DMT400076252 PGSC0003DMT400076252 PGSC0003DMT400069419 PGSC0003DMT400069419 PGSC0003DMT400078229 PGSC0003DMT400078229 PGSC0003DMT400051791 PGSC0003DMT400051791 PGSC0003DMT400046818 PGSC0003DMT400046818 PGSC0003DMT400068240 PGSC0003DMT400068240
"PGSC0003DMT400008694" - Nucleic acid binding protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400008694Nucleic acid binding protein (528 aa)    
Predicted Functional Partners:
PGSC0003DMT400074006
Oxidoreductase/ transition metal ion binding protein (298 aa)
       
 
  0.852
PGSC0003DMT400042209
Zinc finger protein (308 aa)
           
  0.844
PGSC0003DMT400019013
Conserved gene of unknown function (153 aa)
           
  0.844
PGSC0003DMT400089240
Invertase inhibitor (178 aa)
           
  0.842
PGSC0003DMT400051791
Transcriptional activator (344 aa)
       
  0.767
PGSC0003DMT400078229
Receptor protein kinase (1232 aa)
     
  0.744
PGSC0003DMT400076252
Histone deacetylase (536 aa)
       
  0.729
PGSC0003DMT400069419
HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (471 aa)
       
  0.729
PGSC0003DMT400068240
Histone deacetylase (397 aa)
       
  0.729
PGSC0003DMT400046818
Histone deacetylase (456 aa)
       
  0.729
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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