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PGSC0003DMT400020675 PGSC0003DMT400020675 PGSC0003DMT400000473 PGSC0003DMT400000473 PGSC0003DMT400000574 PGSC0003DMT400000574 PGSC0003DMT400008780 PGSC0003DMT400008780 PGSC0003DMT400040652 PGSC0003DMT400040652 PGSC0003DMT400000575 PGSC0003DMT400000575 PGSC0003DMT400029795 PGSC0003DMT400029795 PGSC0003DMT400000163 PGSC0003DMT400000163 PGSC0003DMT400040127 PGSC0003DMT400040127 PGSC0003DMT400077919 PGSC0003DMT400077919 PGSC0003DMT400000158 PGSC0003DMT400000158
"PGSC0003DMT400008780" - General negative transcription regulator in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400008780General negative transcription regulator (629 aa)    
Predicted Functional Partners:
PGSC0003DMT400000575
Ccr4-not transcription complex (407 aa)
     
  0.968
PGSC0003DMT400000574
Ccr4-not transcription complex (464 aa)
     
  0.968
PGSC0003DMT400000473
Ccr4-not transcription complex (391 aa)
     
  0.968
PGSC0003DMT400000163
Ccr4-not transcription complex (231 aa)
     
  0.968
PGSC0003DMT400000158
Ccr4-not transcription complex (385 aa)
     
  0.968
PGSC0003DMT400077919
CCR4-NOT transcription complex subunit (670 aa)
     
  0.911
PGSC0003DMT400040127
VIP2 (661 aa)
     
  0.911
PGSC0003DMT400020675
Thioredoxin (215 aa)
     
  0.911
PGSC0003DMT400040652
RNA exonuclease NGL1 (364 aa)
     
  0.906
PGSC0003DMT400029795
Carbon catabolite repressor protein (605 aa)
     
  0.906
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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