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PGSC0003DMT400079675 PGSC0003DMT400079675 PGSC0003DMT400050536 PGSC0003DMT400050536 PGSC0003DMT400065096 PGSC0003DMT400065096 PGSC0003DMT400008907 PGSC0003DMT400008907 PGSC0003DMT400012502 PGSC0003DMT400012502 PGSC0003DMT400039505 PGSC0003DMT400039505 PGSC0003DMT400009096 PGSC0003DMT400009096 PGSC0003DMT400060209 PGSC0003DMT400060209 PGSC0003DMT400073985 PGSC0003DMT400073985 rpoB rpoB PGSC0003DMT400033897 PGSC0003DMT400033897
"PGSC0003DMT400009096" - Beta-galactosidase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400009096Beta-galactosidase (845 aa)    
Predicted Functional Partners:
PGSC0003DMT400060209
Methionyl-tRNA synthetase (AtcpMetRS) (645 aa)
       
      0.895
PGSC0003DMT400073985
Methionyl-tRNA synthetase (812 aa)
       
      0.601
PGSC0003DMT400012502
Beta-galactosidase (254 aa)
   
          0.526
PGSC0003DMT400065096
Alpha-galactosidase/alpha-n-acetylgalactosaminidase (418 aa)
     
   
  0.464
PGSC0003DMT400039505
Alpha-galactosidase (411 aa)
     
   
  0.464
PGSC0003DMT400008907
Glycosyl hydrolase family (444 aa)
     
   
  0.464
PGSC0003DMT400050536
Alpha-l-fucosidase (468 aa)
 
     
  0.455
PGSC0003DMT400079675
Alpha-l-fucosidase (482 aa)
 
     
  0.453
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (593 aa)
           
  0.450
PGSC0003DMT400033897
Acetolactate synthase 1, chloroplastic (656 aa)
           
  0.450
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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