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PGSC0003DMT400046204 PGSC0003DMT400046204 PGSC0003DMT400095716 PGSC0003DMT400095716 PGSC0003DMT400089964 PGSC0003DMT400089964 PGSC0003DMT400094391 PGSC0003DMT400094391 PGSC0003DMT400094045 PGSC0003DMT400094045 PGSC0003DMT400009869 PGSC0003DMT400009869 PGSC0003DMT400090387 PGSC0003DMT400090387 PEST2 PEST2 PGSC0003DMT400066791 PGSC0003DMT400066791 PGSC0003DMT400081312 PGSC0003DMT400081312 PGSC0003DMT400048876 PGSC0003DMT400048876
"PGSC0003DMT400009869" - Pectate lyase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400009869Pectate lyase (426 aa)    
Predicted Functional Partners:
PGSC0003DMT400081312
Pectinesterase (562 aa)
   
 
  0.920
PGSC0003DMT400066791
Pectinesterase (516 aa)
   
 
  0.920
PGSC0003DMT400046204
Pectinesterase (564 aa)
   
 
  0.920
PEST2
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (586 aa)
   
 
  0.920
PGSC0003DMT400048876
Pectinesterase (571 aa)
   
 
  0.920
PGSC0003DMT400095716
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (330 aa)
       
  0.920
PGSC0003DMT400094391
Pectinesterase (356 aa)
       
  0.920
PGSC0003DMT400094045
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin (570 aa)
       
  0.920
PGSC0003DMT400090387
Pectinesterase (552 aa)
       
  0.920
PGSC0003DMT400089964
Pectinesterase (521 aa)
       
  0.920
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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