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PGSC0003DMT400071034 PGSC0003DMT400071034 PGSC0003DMT400018891 PGSC0003DMT400018891 PGSC0003DMT400047178 PGSC0003DMT400047178 PGSC0003DMT400073947 PGSC0003DMT400073947 PGSC0003DMT400044280 PGSC0003DMT400044280 PGSC0003DMT400069042 PGSC0003DMT400069042 PGSC0003DMT400057783 PGSC0003DMT400057783 PGSC0003DMT400033081 PGSC0003DMT400033081 PGSC0003DMT400009873 PGSC0003DMT400009873 PGSC0003DMT400023450 PGSC0003DMT400023450 PGSC0003DMT400007348 PGSC0003DMT400007348
"PGSC0003DMT400009873" - Splicing factor 3A subunit in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400009873Splicing factor 3A subunit (339 aa)    
Predicted Functional Partners:
PGSC0003DMT400023450
Splicing factor 3a (509 aa)
     
  0.998
PGSC0003DMT400018891
Spliceosome associated protein (802 aa)
     
  0.997
PGSC0003DMT400007348
Spliceosome associated protein (803 aa)
     
  0.997
PGSC0003DMT400047178
Pre-mRNA splicing factor (1019 aa)
     
  0.990
PGSC0003DMT400033081
U4/U6 small nuclear ribonucleoprotein Prp4 (583 aa)
     
  0.988
PGSC0003DMT400071034
Pre-mRNA splicing factor (81 aa)
     
  0.987
PGSC0003DMT400069042
Splicing factor 3B subunit (584 aa)
     
  0.986
PGSC0003DMT400057783
Splicing factor 3B subunit (586 aa)
     
  0.986
PGSC0003DMT400044280
Pre-mRNA-splicing factor (521 aa)
     
  0.986
PGSC0003DMT400073947
PRP8 protein (2389 aa)
     
  0.985
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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