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PGSC0003DMT400024409 PGSC0003DMT400024409 PGSC0003DMT400092780 PGSC0003DMT400092780 hma1 hma1 PGSC0003DMT400059564 PGSC0003DMT400059564 PGSC0003DMT400009920 PGSC0003DMT400009920 PGSC0003DMT400059417 PGSC0003DMT400059417 PGSC0003DMT400032161 PGSC0003DMT400032161 PGSC0003DMT400027651 PGSC0003DMT400027651 PGSC0003DMT400032707 PGSC0003DMT400032707 PGSC0003DMT400001102 PGSC0003DMT400001102 PGSC0003DMT400032160 PGSC0003DMT400032160
"PGSC0003DMT400009920" - Farnesylated protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400009920Farnesylated protein (367 aa)    
Predicted Functional Partners:
hma1
Heavy metal cation transport atpase (817 aa)
     
  0.915
PGSC0003DMT400032707
Copper-transporting atpase paa1 (234 aa)
     
  0.915
PGSC0003DMT400032161
Heavy metal ATPase (132 aa)
     
  0.915
PGSC0003DMT400032160
Copper-transporting atpase p-type (397 aa)
     
  0.915
PGSC0003DMT400024409
Heavy metal ATPase (1002 aa)
     
  0.915
PGSC0003DMT400059417
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (165 aa)
       
  0.837
PGSC0003DMT400027651
Superoxide dismutase [Cu-Zn] 2; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (152 aa)
       
  0.837
PGSC0003DMT400001102
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (215 aa)
       
  0.837
PGSC0003DMT400092780
Copper transporter (256 aa)
     
   
  0.535
PGSC0003DMT400059564
Copper transporter (141 aa)
     
   
  0.535
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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