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PGSC0003DMT400065108 PGSC0003DMT400065108 PGSC0003DMT400002636 PGSC0003DMT400002636 PGSC0003DMT400009949 PGSC0003DMT400009949 PGSC0003DMT400089149 PGSC0003DMT400089149 PGSC0003DMT400059650 PGSC0003DMT400059650 PGSC0003DMT400011736 PGSC0003DMT400011736 PGSC0003DMT400025851 PGSC0003DMT400025851 PGSC0003DMT400057274 PGSC0003DMT400057274 PGSC0003DMT400056100 PGSC0003DMT400056100 PGSC0003DMT400033711 PGSC0003DMT400033711 PGSC0003DMT400002635 PGSC0003DMT400002635
"PGSC0003DMT400009949" - PGPD14 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400009949PGPD14 (288 aa)    
Predicted Functional Partners:
PGSC0003DMT400033711
E3 ubiquitin-protein ligase RKP (1048 aa)
         
  0.729
PGSC0003DMT400011736
Ubiquitin extension protein (181 aa)
     
    0.583
PGSC0003DMT400065108
Coiled-coil-helix-coiled-coil-helix domain containing protein (154 aa)
       
 
  0.582
PGSC0003DMT400025851
BTB/POZ domain-containing protein (803 aa)
     
    0.564
PGSC0003DMT400002636
DNA polymerase eta (400 aa)
     
  0.537
PGSC0003DMT400002635
Translesion synthesis DNA polymerase eta splice variant (326 aa)
     
  0.537
PGSC0003DMT400089149
Polyubiquitin (457 aa)
     
  0.531
PGSC0003DMT400059650
Ubiquitin (205 aa)
     
  0.531
PGSC0003DMT400057274
Polyubiquitin (190 aa)
     
  0.531
PGSC0003DMT400056100
Ubiquitin (207 aa)
     
  0.531
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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