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PGSC0003DMT400075431 PGSC0003DMT400075431 PGSC0003DMT400057595 PGSC0003DMT400057595 PGSC0003DMT400017726 PGSC0003DMT400017726 PGSC0003DMT400074483 PGSC0003DMT400074483 PGSC0003DMT400068702 PGSC0003DMT400068702 PGSC0003DMT400068281 PGSC0003DMT400068281 PGSC0003DMT400006885 PGSC0003DMT400006885 PGSC0003DMT400044280 PGSC0003DMT400044280 PGSC0003DMT400010145 PGSC0003DMT400010145 PGSC0003DMT400021460 PGSC0003DMT400021460 PGSC0003DMT400042248 PGSC0003DMT400042248
"PGSC0003DMT400010145" - Transducin family protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400010145Transducin family protein (299 aa)    
Predicted Functional Partners:
PGSC0003DMT400057595
Conserved gene of unknown function (580 aa)
   
   
0.954
PGSC0003DMT400075431
Pre-mRNA-splicing factor (451 aa)
   
 
      0.952
PGSC0003DMT400044280
Pre-mRNA-splicing factor (521 aa)
   
 
   
0.925
PGSC0003DMT400021460
Conserved gene of unknown function; Phosphodiesterase responsible for the U6 snRNA 3’ end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA (285 aa)
       
      0.677
PGSC0003DMT400042248
Conserved gene of unknown function (164 aa)
       
      0.664
PGSC0003DMT400017726
XPA-binding protein (915 aa)
       
      0.664
PGSC0003DMT400068281
G10 (145 aa)
       
      0.635
PGSC0003DMT400006885
Protein G10 (145 aa)
       
      0.635
PGSC0003DMT400074483
Pre-mRNA-splicing factor syf2 (109 aa)
     
      0.614
PGSC0003DMT400068702
Pre-mRNA-splicing factor syf2 (310 aa)
     
      0.614
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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