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PGSC0003DMT400021423 PGSC0003DMT400021423 PGSC0003DMT400073095 PGSC0003DMT400073095 PGSC0003DMT400060107 PGSC0003DMT400060107 PGSC0003DMT400070949 PGSC0003DMT400070949 PGSC0003DMT400017978 PGSC0003DMT400017978 PGSC0003DMT400010466 PGSC0003DMT400010466 PGSC0003DMT400024406 PGSC0003DMT400024406 PGSC0003DMT400053682 PGSC0003DMT400053682 PGSC0003DMT400033081 PGSC0003DMT400033081 PGSC0003DMT400079554 PGSC0003DMT400079554 PGSC0003DMT400036975 PGSC0003DMT400036975
"PGSC0003DMT400010466" - U4/U6.U5 tri-snRNP-associated protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400010466U4/U6.U5 tri-snRNP-associated protein (215 aa)    
Predicted Functional Partners:
PGSC0003DMT400024406
Ubiquitin specific protease 39 and snrnp assembly factor (551 aa)
     
  0.788
PGSC0003DMT400033081
U4/U6 small nuclear ribonucleoprotein Prp4 (583 aa)
     
    0.780
PGSC0003DMT400060107
80A08_4; Probable pre-rRNA processing protein involved in ribosome biogenesis (268 aa)
       
      0.677
PGSC0003DMT400079554
RNA-binding region RNP-1 and Splicing factor PWI family member protein (939 aa)
       
      0.640
PGSC0003DMT400017978
Pre-mRNA-splicing factor isy-1 (299 aa)
     
 
    0.602
PGSC0003DMT400073095
DNA-directed RNA polymerase II 19 kD polypeptide rpb7 (180 aa)
     
 
    0.597
PGSC0003DMT400070949
DNA-directed RNA polymerase II 19 kD polypeptide rpb7 (158 aa)
     
 
    0.597
PGSC0003DMT400053682
DNA-directed RNA polymerase II 19 kD polypeptide rpb7 (167 aa)
     
 
    0.597
PGSC0003DMT400036975
DNA-directed RNA polymerase II 19 kD polypeptide rpb7 (180 aa)
     
 
    0.597
PGSC0003DMT400021423
DNA-directed RNA polymerase II 19 kD polypeptide rpb7 (180 aa)
     
 
    0.597
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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