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PGSC0003DMT400081774 PGSC0003DMT400081774 SAMDC SAMDC PGSC0003DMT400079043 PGSC0003DMT400079043 PGSC0003DMT400094539 PGSC0003DMT400094539 CPA CPA PGSC0003DMT400025792 PGSC0003DMT400025792 SpdSy SpdSy PGSC0003DMT400055123 PGSC0003DMT400055123 PGSC0003DMT400045965 PGSC0003DMT400045965 PGSC0003DMT400041338 PGSC0003DMT400041338 PGSC0003DMT400026052 PGSC0003DMT400026052
"SpdSy" - Spermidine synthase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SpdSySpermidine synthase (347 aa)    
Predicted Functional Partners:
PGSC0003DMT400025792
Ornithine decarboxylase (431 aa)
   
  0.978
CPA
N-carbamoylputrescine amidase; Involved in polyamine biosynthesis (300 aa)
   
 
  0.975
PGSC0003DMT400081774
S-adenosylmethionine decarboxylase proenzyme (330 aa)
     
 
  0.966
PGSC0003DMT400079043
S-adenosylmethionine decarboxylase proenzyme (336 aa)
     
 
  0.966
PGSC0003DMT400041338
S-adenosylmethionine decarboxylase proenzyme (363 aa)
     
 
  0.966
PGSC0003DMT400026052
S-adenosylmethionine decarboxylase proenzyme (362 aa)
     
 
  0.966
SAMDC
S-adenosylmethionine decarboxylase beta chain (360 aa)
     
 
  0.966
PGSC0003DMT400094539
Amine oxidase (540 aa)
         
  0.907
PGSC0003DMT400055123
ATPAO5 (520 aa)
         
  0.907
PGSC0003DMT400045965
ATPAO5 (520 aa)
         
  0.907
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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