Full Link:
close STRING Website Improvement Campaign
deny allow Over the next 24 hours, we are collecting usage information on the web-interface (learn more).   Do you allow anonymous tracking of your activity ?
STRINGSTRING
PGSC0003DMT400054077 PGSC0003DMT400054077 PGSC0003DMT400013409 PGSC0003DMT400013409 PGSC0003DMT400081991 PGSC0003DMT400081991 PGSC0003DMT400001077 PGSC0003DMT400001077 PGSC0003DMT400081863 PGSC0003DMT400081863 PGSC0003DMT400011266 PGSC0003DMT400011266 PGSC0003DMT400015673 PGSC0003DMT400015673 PGSC0003DMT400079491 PGSC0003DMT400079491 PGSC0003DMT400036142 PGSC0003DMT400036142 PGSC0003DMT400080984 PGSC0003DMT400080984 PGSC0003DMT400023994 PGSC0003DMT400023994
"PGSC0003DMT400011266" - Brix domain-containing protein in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400011266Brix domain-containing protein (100 aa)    
Predicted Functional Partners:
PGSC0003DMT400079491
RNA-binding protein (197 aa)
     
      0.998
PGSC0003DMT400015673
Pescadillo; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (618 aa)
     
 
  0.984
PGSC0003DMT400081991
RRNA-processing protein EBP2 (291 aa)
     
 
  0.981
PGSC0003DMT400081863
RRNA-processing protein EBP2 (298 aa)
     
 
  0.981
PGSC0003DMT400080984
Ribosomal RNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (802 aa)
     
        0.976
PGSC0003DMT400054077
Ribosomal RNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (801 aa)
     
        0.976
PGSC0003DMT400036142
Trichohyalin (617 aa)
     
        0.976
PGSC0003DMT400023994
Ribosomal RNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits (813 aa)
     
        0.976
PGSC0003DMT400013409
Ribosomal RNA methyltransferase (163 aa)
     
        0.976
PGSC0003DMT400001077
RNA processing factor 1 (355 aa)
     
 
  0.969
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
Server load: low (3%)