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PGSC0003DMT400015272 PGSC0003DMT400015272 PGSC0003DMT400070974 PGSC0003DMT400070974 PGSC0003DMT400054790 PGSC0003DMT400054790 PGSC0003DMT400060589 PGSC0003DMT400060589 PGSC0003DMT400015271 PGSC0003DMT400015271 PGSC0003DMT400011546 PGSC0003DMT400011546 PGSC0003DMT400056149 PGSC0003DMT400056149 PGSC0003DMT400060067 PGSC0003DMT400060067 PGSC0003DMT400029782 PGSC0003DMT400029782 PGSC0003DMT400040249 PGSC0003DMT400040249 PGSC0003DMT400029780 PGSC0003DMT400029780
"PGSC0003DMT400011546" - Cytochrome P450 in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400011546Cytochrome P450 (663 aa)    
Predicted Functional Partners:
PGSC0003DMT400060589
Transducin family protein (427 aa)
     
      0.630
PGSC0003DMT400015272
WD-repeat protein (442 aa)
     
      0.630
PGSC0003DMT400015271
WD-repeat protein (175 aa)
     
      0.630
PGSC0003DMT400060067
Signal transducer (747 aa)
     
   
  0.590
PGSC0003DMT400056149
TRNA-(N1G37) methyltransferase; Specifically methylates the N1 position of guanosine-37 in various cytoplasmic and mitochondrial tRNAs. Methylation is not dependent on the nature of the nucleoside 5’ of the target nucleoside. This is the first step in the biosynthesis of wybutosine (yW), a modified base adjacent to the anticodon of tRNAs and required for accurate decoding (579 aa)
     
   
  0.579
PGSC0003DMT400040249
Conserved gene of unknown function (104 aa)
     
   
  0.579
PGSC0003DMT400070974
Uroporphyrinogen decarboxylase, chloroplastic (422 aa)
       
    0.561
PGSC0003DMT400054790
Uroporphyrinogen decarboxylase (420 aa)
       
    0.561
PGSC0003DMT400029782
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1151 aa)
     
   
  0.505
PGSC0003DMT400029780
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1153 aa)
     
   
  0.505
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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