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PGSC0003DMT400034361 PGSC0003DMT400034361 PGSC0003DMT400093717 PGSC0003DMT400093717 PGSC0003DMT400011784 PGSC0003DMT400011784 PGSC0003DMT400034628 PGSC0003DMT400034628 PGSC0003DMT400030280 PGSC0003DMT400030280 PGSC0003DMT400076712 PGSC0003DMT400076712 PGSC0003DMT400023485 PGSC0003DMT400023485 PGSC0003DMT400011993 PGSC0003DMT400011993 PGSC0003DMT400010706 PGSC0003DMT400010706 PGSC0003DMT400003351 PGSC0003DMT400003351 PGSC0003DMT400016961 PGSC0003DMT400016961
"PGSC0003DMT400011784" - Pectinesterase in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400011784Pectinesterase (692 aa)    
Predicted Functional Partners:
PGSC0003DMT400023485
Conserved gene of unknown function (1223 aa)
     
  0.976
PGSC0003DMT400011993
Binding protein (1337 aa)
     
  0.957
PGSC0003DMT400093717
Condensin complex components subunit (129 aa)
     
  0.829
PGSC0003DMT400034361
Structural maintenance of chromosome (240 aa)
     
  0.829
PGSC0003DMT400016961
Condensin complex components subunit (200 aa)
     
  0.829
PGSC0003DMT400003351
Condensin complex components subunit (1246 aa)
     
  0.829
PGSC0003DMT400030280
Conserved gene of unknown function (1016 aa)
     
 
    0.657
PGSC0003DMT400034628
EMB2656 (EMBRYO DEFECTIVE 2656); binding (666 aa)
     
 
  0.646
PGSC0003DMT400010706
TOR (TARGET OF RAPAMYCIN); 1-phosphatidylinositol-3-kinase/ protein binding (270 aa)
     
   
  0.590
PGSC0003DMT400076712
Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases (1343 aa)
     
   
  0.588
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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