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PGSC0003DMT400024272 PGSC0003DMT400024272 PGSC0003DMT400004390 PGSC0003DMT400004390 PGSC0003DMT400011839 PGSC0003DMT400011839 PGSC0003DMT400027159 PGSC0003DMT400027159 PGSC0003DMT400075837 PGSC0003DMT400075837
"PGSC0003DMT400011839" - GRAS family transcription factor in Solanum tuberosum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGSC0003DMT400011839GRAS family transcription factor (468 aa)    
Predicted Functional Partners:
PGSC0003DMT400024272
Nucleic acid binding protein (495 aa)
       
 
  0.554
PGSC0003DMT400027159
Zinc finger protein JACKDAW (492 aa)
       
 
  0.539
PGSC0003DMT400004390
C2H2L domain class transcription factor (456 aa)
       
 
  0.539
PGSC0003DMT400075837
C2H2L domain class transcription factor (518 aa)
       
      0.523
Your Current Organism:
Solanum tuberosum
NCBI taxonomy Id: 4113
Other names: S. tuberosum, Solanum tuberosum, Solanum tuberosum L., Solanum tuberosum subsp. tuberosum, potato, potatoes
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